Honours Physics: Biological Physics (82 credits)

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Offered by: Physics     Degree: Bachelor of Science

Program Requirements

**NEW PROGRAM**

The B.Sc. Honours Physics: Biological Physics program keeps a strong core of foundational physics and specializes through courses in biology, mathematics, physiology, computer science, and chemistry. The Honours program offers a more rigorous preparation, with additional research experience, for students with a strong interest in biophysics. In the final year, students will have an opportunity to carry out a research project within a biophysics lab in the department. This program provides a very strong foundation for students wishing to pursue graduate studies in biophysics, as well as for research careers in industrial, hospital, or academic laboratory settings.

Required Courses (63 credits)

Bio-Physical Sciences Core (24 credits)

  • BIOL 219 Introduction to Physical Biology of the Cell (4 credits)

    Offered by: Biology (Faculty of Science)

    Overview

    Biology (Sci) : This course is an introduction to molecular and cell biology, using a physical biology perspective. New technologies and methodologies, both experimental and computational, are embedded in the presentation of each topic.

    Terms: Fall 2017

    Instructors: Jacalyn Vogel, Gil Bub, Mathieu Blanchette, Anthony Mittermaier, Paul Francois, Stephanie Weber (Fall)

    • Prerequisite(s): 1 year of college calculus, chemistry, and physics or equivalents, BIOL 112 or equivalent

    • Corequisite(s): MATH 222 and CHEM 212

    • Restriction(s): Not open to students who have taken or are taking ANAT 212, BIOC 212, BIOL 200, and BIOL 201.

    • Restricted to students in Computer Science-Biology, Biology-Mathematics, Physiology-Physics, Physiology-Mathematics, Biology-Quantitative Biology, Chemistry-Biophysical Chemistry, and Physics-Biological Physics options.

    • This course is meant to prepare students for related 300-level courses in Biology, Chemistry, Physics, etc.

  • BIOL 395 Quantitative Biology Seminar 1 (1 credit)

    Offered by: Biology (Faculty of Science)

    Overview

    Biology (Sci) : Overview of concepts and current research in quantitative biology; theoretical ecology and evolution, computational biology, and physical biology.

    Terms: Fall 2017

    Instructors: Frederic Guichard, Jacalyn Vogel (Fall)

    • Fall

    • Prerequisites: BIOL 200, CHEM 212, COMP 250, MATH 222, PHYS 230

    • Restriction: Registration restricted to U2 students in the Quantitative Biology program, joint Computer Science and Biology and joint Math and Biology programs.

  • CHEM 212 Introductory Organic Chemistry 1 (4 credits) *

    Offered by: Chemistry (Faculty of Science)

    Overview

    Chemistry : A survey of reactions of aliphatic and aromatic compounds including modern concepts of bonding, mechanisms, conformational analysis, and stereochemistry.

    Terms: Fall 2017, Winter 2018, Summer 2018

    Instructors: Laura Pavelka, Michel Daoust, Jean-Marc Gauthier, Hanadi Sleiman (Fall) Jean-Philip Lumb, Mitchell Huot, Michel Daoust, Jean-Marc Gauthier, Danielle Vlaho (Winter) Danielle Vlaho, Michel Daoust, Jean-Marc Gauthier (Summer)

  • MATH 247 Honours Applied Linear Algebra (3 credits)

    Offered by: Mathematics and Statistics (Faculty of Science)

    Overview

    Mathematics & Statistics (Sci) : Matrix algebra, determinants, systems of linear equations. Abstract vector spaces, inner product spaces, Fourier series. Linear transformations and their matrix representations. Eigenvalues and eigenvectors, diagonalizable and defective matrices, positive definite and semidefinite matrices. Quadratic and Hermitian forms, generalized eigenvalue problems, simultaneous reduction of quadratic forms. Applications.

    Terms: Winter 2018

    Instructors: Axel W Hundemer (Winter)

    • Winter

    • Prerequisite: MATH 133 or equivalent.

    • Restriction: Intended for Honours Physics and Engineering students

    • Restriction: Not open to students who have taken or are taking MATH 236, MATH 223 or MATH 251

  • MATH 315 Ordinary Differential Equations (3 credits)

    Offered by: Mathematics and Statistics (Faculty of Science)

    Overview

    Mathematics & Statistics (Sci) : First order ordinary differential equations including elementary numerical methods. Linear differential equations. Laplace transforms. Series solutions.

    Terms: Fall 2017, Winter 2018, Summer 2018

    Instructors: Jean-Christophe Nave (Fall) Jean-Philippe Lessard (Winter) Charles Roth (Summer)

    • Prerequisite: MATH 222.

    • Corequisite: MATH 133.

    • Restriction: Not open to students who have taken or are taking MATH 325.

  • MATH 323 Probability (3 credits)

    Offered by: Mathematics and Statistics (Faculty of Science)

    Overview

    Mathematics & Statistics (Sci) : Sample space, events, conditional probability, independence of events, Bayes' Theorem. Basic combinatorial probability, random variables, discrete and continuous univariate and multivariate distributions. Independence of random variables. Inequalities, weak law of large numbers, central limit theorem.

    Terms: Fall 2017, Winter 2018, Summer 2018

    Instructors: David B Wolfson (Fall) Chien-Lin Su (Winter) Djivede Kelome (Summer)

    • Prerequisites: MATH 141 or equivalent.

    • Restriction: Intended for students in Science, Engineering and related disciplines, who have had differential and integral calculus

    • Restriction: Not open to students who have taken or are taking MATH 356

  • PHYS 319 Introduction to Biophysics (3 credits)

    Offered by: Physics (Faculty of Science)

    Overview

    Physics : Emerging physical approaches and quantitative measurement techniques are providing new insights into longstanding biological questions. This course will present underlying physical theory, quantitative measurement techniques, and significant findings in molecular and cellular biophysics. Principles covered include Brownian motion, low Reynolds-number environments, forces relevant to cells and molecules, chemical potentials, and free energies. These principles are applied to enzymes as molecular machines, membranes, DNA, and RNA.

    Terms: Winter 2018

    Instructors: Paul Wiseman (Winter)

    • Winter. Students with training in physics and biology will be well-suited to the course.

    • Prerequisites: BIOL 200; MATH 222; PHYS 230 and (PHYS 232 or PHYS 253), or permission of the instructor.

    • Restriction: Not open to students who have taken or are taking BIOL 319

  • PHYS 329 Statistical Physics with Biophysical Applications (3 credits)

    Offered by: Physics (Faculty of Science)

    Overview

    Physics : This interdisciplinary course introduces Statistical Physics illustrated with modern biophysical applications. Principles covered include partition functions, Boltzmann distribution, bosons, fermions, Bose Einstein condensates, Ferni gases, chemical potential, thermodynamical forces, biochemical kinetics, and an introduction to noise and phase transitions in biology.

    Terms: This course is not scheduled for the 2017-2018 academic year.

    Instructors: There are no professors associated with this course for the 2017-2018 academic year.

* Students who have taken the equivalent of CHEM 212 can make up the credits with complementary 3 or 4 credit courses in consultation with the program adviser.

Biology and Mathematics (6 credits)

  • BIOL 202 Basic Genetics (3 credits)

    Offered by: Biology (Faculty of Science)

    Overview

    Biology (Sci) : Introduction to basic principles, and to modern advances, problems and applications in the genetics of higher and lower organisms with examples representative of the biological sciences.

    Terms: Winter 2018, Summer 2018

    Instructors: Nam Sung Moon, Laura Nilson, Daniel J Schoen (Winter) Nam Sung Moon, Paul Lasko, Andrew Hendry, David Hipfner (Summer)

    • Winter, Summer

    • 3 hours lecture, 1 hour optional tutorial

    • Prerequisite: BIOL 200.

    • Restriction: Not open to students who have taken or are taking LSCI 204.

  • MATH 248 Honours Advanced Calculus (3 credits)

    Offered by: Mathematics and Statistics (Faculty of Science)

    Overview

    Mathematics & Statistics (Sci) : Partial derivatives; implicit functions; Jacobians; maxima and minima; Lagrange multipliers. Scalar and vector fields; orthogonal curvilinear coordinates. Multiple integrals; arc length, volume and surface area. Line integrals; Green's theorem; the divergence theorem. Stokes' theorem; irrotational and solenoidal fields; applications.

    Terms: Fall 2017

    Instructors: Pengfei Guan (Fall)

    • Fall and Winter and Summer

    • Prerequisites: MATH 133 and MATH 222 or consent of Department.

    • Restriction: Intended for Honours Mathematics, Physics and Engineering students

    • Restriction: Not open to students who have taken or are taking MATH 314

Physics (33 credits)

  • PHYS 241 Signal Processing (3 credits)

    Offered by: Physics (Faculty of Science)

    Overview

    Physics : Linear circuit elements, resonance, network theorems, diodes, transistors, amplifiers, feedback, integrated circuits.

    Terms: Winter 2018

    Instructors: Matthew Adam Dobbs (Winter)

    • Winter

    • 2 hours lectures; 3 hours laboratory alternate weeks

    • Prerequisite: CEGEP physics or PHYS 142.

  • PHYS 251 Honours Classical Mechanics 1 (3 credits)

    Offered by: Physics (Faculty of Science)

    Overview

    Physics : Newton's laws, work energy, angular momentum. Harmonic oscillator, forced oscillations. Inertial forces, rotating frames. Central forces, centre of mass, planetary orbits, Kepler's laws.

    Terms: Fall 2017

    Instructors: Ryo Namba (Fall)

    • Fall

    • 3 hours lectures

    • Prerequisite: CEGEP physics or PHYS 131.

    • Corequisite: MATH 222

    • Restriction: Not open to students taking or having taken PHYS 230.

  • PHYS 253 Thermal Physics (3 credits)

    Offered by: Physics (Faculty of Science)

    Overview

    Physics : Energy, work, heat; first law. Temperature, entropy; second law. Absolute zero; third law. Equilibrium, equations of state, gases, liquids, solids, magnets; phase transitions.

    Terms: Fall 2017

    Instructors: Rakesh Prabhat Tiwari (Fall)

    • Fall

    • 3 hours lectures

    • Prerequisites: CEGEP physics or PHYS 131, and CEGEP chemistry or CHEM 120.

    • Corequisite: MATH 222

    • Restriction: Not open to students taking or having taken PHYS 232.

  • PHYS 257 Experimental Methods 1 (3 credits)

    Offered by: Physics (Faculty of Science)

    Overview

    Physics : Introductory laboratory work and data analysis as related to mechanics, optics and thermodynamics. Introduction to computers as they are employed for laboratory work, for data analysis and for numerical computation. Previous experience with computers is an asset, but is not required.

    Terms: Fall 2017

    Instructors: Bradley Siwick (Fall)

    • Fall

    • 6 hours of laboratory and classroom work

    • Corequisite: PHYS 230 or PHYS 251

  • PHYS 258 Experimental Methods 2 (3 credits)

    Offered by: Physics (Faculty of Science)

    Overview

    Physics : Advanced laboratory work and data analysis as related to mechanics, optics and thermodynamics. Computers will be employed routinely for data analysis and for numerical computation, and, particularly, to facilitate the use of Fourier methods.

    Terms: Winter 2018

    Instructors: Thomas Brunner (Winter)

    • Winter

    • 6 hours of laboratory and classroom work

    • Prerequisite: PHYS 257

  • PHYS 350 Honours Electricity and Magnetism (3 credits)

    Offered by: Physics (Faculty of Science)

    Overview

    Physics : Fundamental laws of electric and magnetic fields in both integral and differential form.

    Terms: Fall 2017

    Instructors: Walter Reisner (Fall)

    • Fall

    • 3 hours lectures

    • Prerequisites: MATH 248, MATH 325.

    • Restriction: Honours students or permission of the instructor

    • Restriction: Not open to students having taken PHYS 340

  • PHYS 352 Honours Electromagnetic Waves (3 credits)

    Offered by: Physics (Faculty of Science)

    Overview

    Physics : Vector and scalar potentials; plane waves in homogeneous media; refraction and reflection; guided waves; radiation from simple systems; dipole and quadrupole radiation; introduction to fields of moving charges; synchrotron radiation; Bremsstrahlung.

    Terms: Fall 2017

    Instructors: David Hanna (Fall)

    • Fall

    • 3 hours lectures

    • Prerequisite: PHYS 350.

    • Restriction: Honours students, or permission of the instructor

  • PHYS 446 Majors Quantum Physics (3 credits)

    Offered by: Physics (Faculty of Science)

    Overview

    Physics : de Broglie waves, Bohr atom. Schroedinger equation, wave functions, observables. One dimensional potentials. Schroedinger equation in three dimensions. Angular momentum, hydrogen atom. Spin, experimental consequences.

    Terms: Fall 2017

    Instructors: Keshav Dasgupta (Fall)

  • PHYS 459D1 Honours Research Thesis (3 credits)

    Offered by: Physics (Faculty of Science)

    Overview

    Physics : Honours supervised research project and thesis.

    Terms: Fall 2017

    Instructors: Thomas Brunner (Fall)

    • Fall

    • 6 hours

    • Restriction: Honours students or permission of instructor

    • Students must register for both PHYS 459D1 and PHYS 459D2.

    • No credit will be given for this course unless both PHYS 459D1 and PHYS 459D2 are successfully completed in consecutive terms

  • PHYS 459D2 Honours Research Thesis (3 credits)

    Offered by: Physics (Faculty of Science)

    Overview

    Physics : See PHYS 459D1 for course description.

    Terms: Winter 2018

    Instructors: Thomas Brunner (Winter)

    • Winter

    • Prerequisite: PHYS 459D1

    • No credit will be given for this course unless both PHYS 459D1 and PHYS 459D2 are successfully completed in consecutive terms

  • PHYS 519 Advanced Biophysics (3 credits)

    Offered by: Physics (Faculty of Science)

    Overview

    Physics : An advanced biophysics course, with a special emphasis on stochastic and out of equilibrium physical processes in living matter.

    Terms: Winter 2018

    Instructors: Paul Francois (Winter)

Complementary Courses

(18-19 credits)
3 credits selected from:

  • COMP 202 Foundations of Programming (3 credits)

    Offered by: Computer Science (Faculty of Science)

    Overview

    Computer Science (Sci) : Introduction to computer programming in a high level language: variables, expressions, primitive types, methods, conditionals, loops. Introduction to algorithms, data structures (arrays, strings), modular software design, libraries, file input/output, debugging, exception handling. Selected topics.

    Terms: Fall 2017, Winter 2018, Summer 2018

    Instructors: David Becerra Romero, Giulia Alberini (Fall) Bentley Oakes, Giulia Alberini (Winter) Giulia Alberini (Summer)

    • 3 hours

    • Prerequisite: a CEGEP level mathematics course

    • Restrictions: COMP 202 and COMP 208 cannot both be taken for credit. COMP 202 is intended as a general introductory course, while COMP 208 is intended for students interested in scientific computation. COMP 202 cannot be taken for credit with or after COMP 250

  • COMP 250 Introduction to Computer Science (3 credits)

    Offered by: Computer Science (Faculty of Science)

    Overview

    Computer Science (Sci) : Mathematical tools (binary numbers, induction, recurrence relations, asymptotic complexity, establishing correctness of programs), Data structures (arrays, stacks, queues, linked lists, trees, binary trees, binary search trees, heaps, hash tables), Recursive and non-recursive algorithms (searching and sorting, tree and graph traversal). Abstract data types, inheritance. Selected topics.

    Terms: Fall 2017, Winter 2018

    Instructors: Michael Langer (Fall) Carlos Gonzalez Oliver, Jérôme Waldispuhl (Winter)

    • 3 hours

    • Prerequisites: Familiarity with a high level programming language and CEGEP level Math.

    • Students with limited programming experience should take COMP 202 or equivalent before COMP 250. See COMP 202 Course Description for a list of topics.

3 credits selected from:

  • PHYS 328 Electronics (3 credits)

    Offered by: Physics (Faculty of Science)

    Overview

    Physics : Semiconductor devices, basic transistor circuits, operational amplifiers, combinatorial and sequential logic, integrated circuits, analogue to digital converters. The laboratory component covers design, construction and testing of basic electronic circuits.

    Terms: Fall 2017

    Instructors: Brigitte Vachon (Fall)

    • Fall

    • 2 hours lectures; 3 hours laboratory

    • Prerequisite: PHYS 241 or permission of instructor

  • PHYS 351 Honours Classical Mechanics 2 (3 credits)

    Offered by: Physics (Faculty of Science)

    Overview

    Physics : Rigid bodies, angular momentum, gyroscope, moment of inertia, principal axes, Euler's equations. Coupled oscillations and normal modes. Lagrangian mechanics and applications. Hamiltonian mechanics. Topics in advanced analytical mechanics.

    Terms: Winter 2018

    Instructors: Guillaume Gervais (Winter)

    • Winter

    • 3 hours lectures

    • Prerequisite: PHYS 251.

    • Restriction: Not open to students who have taken PHYS 451.

3 credits selected from:

  • PHYS 339 Measurements Laboratory in General Physics (3 credits)

    Offered by: Physics (Faculty of Science)

    Overview

    Physics : Introduction to modern techniques of measurement. The use of computers in performing and analysing experiments. Data reduction, statistical methods, report writing. Extensive use of computers is made in this laboratory; therefore some familiarity with computers and computing is an advantage.

    Terms: Winter 2018

    Instructors: David Cooke (Winter)

    • Winter

    • 6 hours

    • Prerequisite: PHYS 241 or permission of instructor

  • PHYS 359 Honours Laboratory in Modern Physics 1 (3 credits)

    Offered by: Physics (Faculty of Science)

    Overview

    Physics : Advanced level experiments in modern physics stressing quantum effects and some properties of condensed matter.

    Terms: Winter 2018

    Instructors: Dominic Ryan, Lilian Childress (Winter)

    • Winter

    • 6 hours

    • Corequisite: PHYS 457. Honours students or permission of instructor

3 credits selected from:

  • CHEM 514 Biophysical Chemistry (3 credits)

    Offered by: Chemistry (Faculty of Science)

    Overview

    Chemistry : Physical chemistry concepts needed to understand the function of biological systems at the molecular level, including the structure, stability, transport, and interactions of biological macromolecules.

    Terms: Winter 2018

    Instructors: Amy Blum, Paul Wiseman (Winter)

  • MATH 437 Mathematical Methods in Biology (3 credits)

    Offered by: Mathematics and Statistics (Faculty of Science)

    Overview

    Mathematics & Statistics (Sci) : The formulation and treatment of realistic mathematical models describing biological phenomena through qualitative and quantitative mathematical techniques (e.g. local and global stability theory, bifurcation analysis and phase plane analysis) and numerical simulation. Concrete and detailed examples will be drawn from molecular and cellular biology and mammalian physiology.

    Terms: Winter 2018

    Instructors: Anmar Khadra (Winter)

  • PHGY 425 Analyzing Physiological Systems (3 credits)

    Offered by: Physiology (Faculty of Science)

    Overview

    Physiology : An introduction to quantitative analysis of physiological data, both to the mode of thinking and to a set of tools that allows accurate predictions of biological systems. Examples will range from oscillating genetic networks to understanding higher brain function. Modelling and data analysis through examples and exercises will be emphasized.

    Terms: Fall 2017

    Instructors: Erik Cook, Mladen I Glavinovic, Maurice Chacron, Anmar Khadra (Fall)

  • PHYS 432 Physics of Fluids (3 credits)

    Offered by: Physics (Faculty of Science)

    Overview

    Physics : The physical properties of fluids. The kinematics and dynamics of flow. The effects of viscosity and turbulence. Applications of fluid mechanics in biophysics, geophysics and engineering.

    Terms: Winter 2018

    Instructors: Sang Yong Jeon (Winter)

  • PHYS 434 Optics (3 credits)

    Offered by: Physics (Faculty of Science)

    Overview

    Physics : Fundamental concepts of optics, including applications and modern developments. Light propagation in media; geometric optics and optical instruments; polarization and coherence properties of light; interference and interferometry; diffraction theory and applications in spectrometry and imaging; Fourier optics; selected special topics such as holography, lasers, beam optics, photonic crystals, advanced spectroscopy, stellar interferometry, quantum optics.

    Terms: Winter 2018

    Instructors: Daryl Haggard (Winter)

    • Winter

    • 3 hours lectures

    • Prerequisite: PHYS 342 or PHYS 352, or permission of the instructor

  • PHYS 447 Applications of Quantum Mechanics (3 credits)

    Offered by: Physics (Faculty of Science)

    Overview

    Physics : One electron atoms, radiation, multielectron atoms, molecular bonds. Selected topics from condensed matter, nuclear and elementary particle physics.

    Terms: Winter 2018

    Instructors: Jack Childress (Winter)

    • Prerequisite(s): PHYS 446

    • Restriction(s): Not open to students who have taken PHYS 436.

    • Restriction(s): Not open to students in Honours Physics or in Joint Honours in Mathematics and Physics.

    • 1. Winter

    • 2. 3 hours lectures

6 to 7 credits selected from:

  • BIOL 300 Molecular Biology of the Gene (3 credits)

    Offered by: Biology (Faculty of Science)

    Overview

    Biology (Sci) : A survey of current knowledge and approaches in the area of regulation of gene expression, post-transcriptional control of gene expression, and signal transduction.

    Terms: Fall 2017

    Instructors: Frieder Schöck, Nam Sung Moon (Fall)

  • BIOL 301 Cell and Molecular Laboratory (4 credits)

    Offered by: Biology (Faculty of Science)

    Overview

    Biology (Sci) : An introduction to laboratory techniques with a focus on methods used to investigate fundamental questions in modern cell and molecular biology. Techniques including gene cloning, DNA and protein isolation and manipulation are covered, along with functional analysis of genes and proteins, basic bioinformatics, and computer-based experimental design and data analysis.

    Terms: Fall 2017, Winter 2018

    Instructors: Huanquan Zheng, Paul Harrison, Rodrigo Reyes Lamothe (Fall) Huanquan Zheng, Paul Harrison, Rodrigo Reyes Lamothe (Winter)

    • Fall or Winter

    • 1 hour lecture and one 6-hour laboratory

    • Prerequisites: PHYS 102 or PHYS 142, BIOL 200, BIOL 201 or ANAT/BIOC 212, and BIOL 202. BIOL 206 recommended.

    • Restrictions: Not open to students who have taken or are taking BIOC 300. Requires departmental approval.

    • For approval email anne-marie.sdicu [at] mcgill.ca. Specify your ID number as well as the term and two lab day preferences.

  • BIOL 303 Developmental Biology (3 credits)

    Offered by: Biology (Faculty of Science)

    Overview

    Biology (Sci) : A consideration of the fundamental processes and principles operating during embryogenesis. Experimental analyses at the molecular, cellular, and organismal levels will be presented and discussed to provide an overall appreciation of developmental phenomena.

    Terms: Winter 2018

    Instructors: Shelton Hendricks, Yong Rao, Daniel Dufort (Winter)

  • BIOL 306 Neural Basis of Behaviour (3 credits)

    Offered by: Biology (Faculty of Science)

    Overview

    Biology (Sci) : Neural mechanisms of animal behaviour; neuroethology; cellular neurophysiology, integrative networks within nervous systems; neural control of movement; processing of sensory information.

    Terms: Fall 2017

    Instructors: Joseph Alan Dent, Jon Sakata, Alanna Watt, Tomoko Oyama (Fall)

  • BIOL 313 Eukaryotic Cell Biology (3 credits)

    Offered by: Biology (Faculty of Science)

    Overview

    Biology (Sci) : Cell biology of eukaryotes focusing on the assembly and function of cellular structures, the regulation of transcription; the dynamics of the cytoskeleton and its motors; mechanics of cell division; cell cycle and checkpoints; nuclear dynamics; chromosome structure and behaviour and experimental techniques.

    Terms: Winter 2018

    Instructors: Stephanie Weber (Winter)

  • BIOL 316 Biomembranes and Organelles (3 credits)

    Offered by: Biology (Faculty of Science)

    Overview

    Biology (Sci) : The course focuses on biomembranes and subcellular organelles and their implications for disease. The topics include: protein and lipid biochemistry, membrane structure and transport; intracellular compartmentalization, protein sorting and modification, intracellular membrane trafficking; energy transfer, organization and dynamics of chloroplasts and mitochondria; extracellular matrix and cell walls.

    Terms: This course is not scheduled for the 2017-2018 academic year.

    Instructors: There are no professors associated with this course for the 2017-2018 academic year.

  • BIOL 551 Principles of Cellular Control (3 credits)

    Offered by: Biology (Faculty of Science)

    Overview

    Biology (Sci) : Fundamental principles of cellular control, with cell cycle control as a major theme. Biological and physical concepts are brought to bear on control in healthy cells..

    Terms: Winter 2018

    Instructors: Jacalyn Vogel, Paul Francois (Winter)

Faculty of Science—2017-2018 (last updated Aug. 23, 2017) (disclaimer)